Articles & Book Chapters
* indicates undergraduate co-authors
2020
39. A. Bombin, O. Cunneely*, K. Eickman*, S. Bombin, A. Ruesy*, M. Su*, A. Myers*, R. Cowan*, and L.K. Reed, 2020, "Influence of Lab Adapted Natural Diet and Microbiota on Life History and Metabolic Phenotype of Drosophila melanogaster", Microorganisms 8(12), 1972; https://doi.org/10.3390/microorganisms8121972
38. L. Griffin and L.K. Reed, 2020 “Effect of gut microbiota on α-amanitin tolerance in Drosophila tripunctata”, Ecology and Evolution, 10, 9419-9427 doi.org/10.1002/ece3.6630
37. C. Scott Chialvo, L. Griffin, L.K. Reed, L. Ciesla, 2020, “Exhaustive extraction of cyclopeptides from Amanita phalloides: guidelines for working with complex mixtures of secondary metabolites”, Ecology and Evolution, 10, 4233-4240 doi.org/10.1002/ece3.6191
36. D. Lopatto, R.G. Rosenwald…L.K. Reed, S.C.R. Elgin, 2020 "Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience". J Microbiol Biol Educ. 21(1):21.1.6. doi:10.1128/jmbe.v21i1.2005
2019
35. C.H. Scott Chialvo, B.E. White, L.K. Reed, K.A. Dyer, 2019 "A phylogenetic examination of host use evolution in the quinaria and testacea groups of Drosophila", Molecular Phylogenetics and Evolution, 130, 233-243 doi:10.1016/j.ympev.2018.10.027
2018
34. V. Oza, J. Aicher, and L.K. Reed, 2018 "Random forest analysis of untargeted metabolomics elucidates the role of diet and triglyceride storage in Drosophila melanogaster larvae", Metabolomics, 9(1), 5, doi.org/10.3390/metabo9010005
33. K. Lowman, B. Wyatt*, O. Cunneely*, L.K. Reed, 2018, "The TreadWheel: Interval Training Protocol for Gently Induced Exercise in Drosophila melanogaster", J. Vis. Exp. (136), e57788, doi:10.3791/57788
2017
32. R. Salek, P. Conesa, K. Cochrane, K. Haug, M. Williams, N. Kale, P. Moreno, K. Jayaseelan, J. Ramon Macias, V. Chandrasekhar, R.D. Hall, L.K Reed, M.R. Viant, C. O'Donovan, C. Steinbeck, 2017, "Automated Assembly of Species Metabolomes through Data Submission into a Public Repository" GigaScience 6(8):1-4. doi.org/10.1093/gigascience/gix062
31. W. Leung…L.K. Reed… SCR Elgin. 2017, "Retrotransposons are the major contributors to the expansion of the Drosophila ananassae Muller F element" (This paper from the Genomics Education Partnership has 272 co-authors; 237 of them participated as students.) G3: GENES, GENOMES, GENETICS 7(8):2439-2460. https://doi.org/10.1534/g3.117.040907
30. D. Lowry, S. Hoban, J. Kelley, K. Lotterhos, L.K. Reed, M. Antolin, A. Stofer, 2017, "Responsible RAD: Striving for best practices in population genomic studies of adaptation" Molecular Ecology Resources,17:366–369. doi.org/10.1111/1755-0998.12677
29. L.K. Reed, C.F. Baer, A.S. Edison, 2017, "Considerations when choosing a genetic model organism for metabolomics studies" Current Opinion in Chemical Biology 36:7–14
28. S.C.R. Elgin, C. Hauser, T.M. Holzen, C. Jones, A. Kleinschmit, J. Leatherman, Genomics Education Partnership (L.K. Reed co-author), 2017, "The GEP: Crowd-Sourcing Big Data Analysis with Undergraduates" Trends in Genetics, 33:81-85.
27. D.B. Lowry, S. Hoban, J.L. Kelley, K.E. Lotterhos, L.K. Reed, M.F. Antolin, A. Storfer, 2017, "Breaking RAD: The utility of restriction site associated DNA sequencing for genome scans of adaptation" Molecular Ecology Resources 17(2):142-152
2016
26. S. Mendez*, L. Watanabe, R. Hill*, M. Owens*, J. Moraczewski, G.C. Rowe, N. Riddle, and L.K. Reed, 2016, "The TreadWheel: A Novel Apparatus to Measure Genetic Variation in Response to Gently Induced Exercise for Drosophila." PLoS ONE 11(10): e0164706.
25. L.K. Reed, 2016 "Resources for Teaching Biological Evolution in the Deep South." In: C. Lynn, A. Glaze, L.K. Reed & W. Evans (eds.) Evolution Education in the American South: Culture, Politics, and Resources in and around Alabama. Palgrave Macmillan
24. C. Scott Chialvo, R. Che, D. Reif, A. Motsinger-Reif, and L.K. Reed, 2016 "Eigenvector metabolite analysis reveals dietary effects on the association among metabolite correlation patterns, gene expression, and phenotypes" Metabolomics 12(167)
23. A. Bombin and L.K. Reed, 2016 "The changing biodiversity of Alabama Drosophila: important impacts of seasonal variation, urbanization, and invasive species." Ecology and Evolution 12;6(19):7057-7069
22. K. Dew-Budd, J. Jarnigan, and L.K. Reed, 2016 "Genetic and sex-specific transgenerational effects of a high fat diet in Drosophila melanogaster" PLoS ONE 11(8): e0160857
21. S. Hoban, J. Kelley, K. Lotterhos, M. Antolin, G. Bradburd, , D. Lowry, M. Poss, L.K. Reed, A. Storfer, and M. Whitlock, 2016 "Finding the genomic basis of local adaptation in non-model organisms: pitfalls, practical solutions and future directions" Am. Nat. Vol. 188, pp. 379-397, DOI: 10.1086/688018
20. A.S. Edison, R.D. Hall, C.Junot, P.D. Karp, I.J. Kurland, R. Mistrik, L.K. Reed, K. Saito, R.M. Salek, C. Steinbeck, L.W. Sumner, M.R. Viant, 2016 "The time is right to focus on model organism metabolomes" Metabolites 6,8; doi:10.3390/metabo6010008
2015
19. S. Williams*, K. Dew-Budd*, K. Davis*, J. Anderson, R. Bishop*, K. Freeman*, D. Davis*, K. Bray*, L. Perkins*, J. Hubickey*, L.K. Reed 2015 "Metabolomic and gene expression profiles exhibit modular genetic and dietary structure linking metabolic syndrome phenotypes in Drosophila" G3: GENES, GENOMES, GENETICS 5:2817-2829
18. Leung, W, C.D. Shaffer, L.K. Reed, [940 student co-authors (four from UA)*, 74 faculty co-authors],
S.C.R. Elgin, 2015 "The Drosophila Muller F elements maintain a distinct set of genomic properties over 40 million years of evolution." G3: GENES, GENOMES, GENETICS 5:719-740
2014
17. D. Lopatto, et al. (L.K. Reed co-author), 2014 "A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics" CBE-Life Sciences 13:711-723
16. L.K. Reed, K. Lee, Z. Zang, L. Rashid, A. Poe*, B. Hsieh, N. Deighton, N. Glassbrook, R. Bodmer, G. Gibson, 2014 "Systems genomics of metabolic phenotypes in wild-type Drosophila melanogaster" Genetics, DOI: 10.1534/genetics.114.163857 - 2014 Spotlight Article
15. C. Shaffer, et al. (L.K.Reed co-author), 2014, "A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time." CBE- Life Sciences 13(1):111-130
2013
14. M. Polihronakis Richmond, S. Johnson, T.S. Haselkorn, M. Lam, L.K. Reed, T.A. Markow, 2013 "Genetic isolation of island populations: geographic barrier or a host switch?" Biological Journal of the Linnean Society, 108: 68-78
2010
13. L.K. Reed, S. Williams*, M. Springston*, J. Brown, K. Freeman*, C.E. DesRoches, M.B. Sokolowski, G. Gibson, 2010 “Genotype-by-Diet Interactions Drive Metabolic Phenotype Variation in Drosophila melanogaster” Genetics 185: 1009–1019
2009
12. E. Pfeiler, S. Castrezana, and L.K. Reed, 2009 “Genetic, ecological and morphological differences among populations of the cactophilic Drosophila mojavensis from southwestern USA and northwestern Mexico, with descriptions of two new subspecies” Journal of Natural History 43:15 923- 938.
2008
11. G.Gibson and L.K. Reed, 2008 “Cryptic genetic variation” Current Biology 18(21): R989-R990
10. L.K. Reed, B.A. LaFlamme*, T.A. Markow, 2008 “Genetic Architecture of Hybrid Male Sterility in Drosophila: Analysis of Intraspecies Variation for Interspecies Isolation.” PLoS ONE 3(8): e3076 doi:10.1371/journal.pone.0003076
9. S. W. Schaeffer et al (L.K. Reed coauthor), 2008 “Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps.” Genetics 179: 1601-1655.
2007
8. Drosophila 12 Genomes Consortium (L.K. Reed coauthor), 2007 “Evolution of genes and genomes in the Drosophila phylogeny” Nature 450: 203-218.
7. C.A. Machado, L.M. Matzkin, L.K. Reed, & T.A. Markow. 2007, “Multilocus nuclear sequences reveal intra and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila.” Molecular Ecology, 16:3009–3024.
6. L.K. Reed, M.E. Nyboer*, & T.A. Markow, 2007 “Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae.” Molecular Ecology, 16: 1007–1022.
2006
5. Markow, T.A., Reed, L.K. and Kelleher, E.S. 2006. “Sperm fate and function in reproductive isolation in Drosophila.” In: Roldan, E.S, and Gomiendo, M. Eds. Spermatology. Nottingham University Press, Nottingham.
4. D. Mathias, L.K. Reed, W.E. Bradshaw & C.M. Holzapfel, 2006 “Evolutionary divergence of circadian and photoperiodic phenotypes in the pitcher-plant mosquito, Wyeomyia smithii.” Journal of Biological Rhythms, 21:132-139.
2005
3. E. Pfeiler, L.K. Reed, & T.A. Markow, 2005 “Inhibition of alcohol dehydrogenase after 2-propanol exposure in different geographic races of Drosophila mojavensis: Lack of evidence for selection at the Adh-2 locus” Journal of Experimental Zoology, 304:159-168
2004
2. L.K. Reed & T.A. Markow, 2004 "Early Events in Speciation: Polymorphism for hybrid male sterility in Drosophila" PNAS, 101: 9009-9012
2003
1. J. Jaenike, K.A. Dyer, & L.K. Reed, 2003 “Within-population structure of competition and the dynamics of male killing Wolbachia” Evolutionary Ecology Research, 5 (7): 1023-1036
39. A. Bombin, O. Cunneely*, K. Eickman*, S. Bombin, A. Ruesy*, M. Su*, A. Myers*, R. Cowan*, and L.K. Reed, 2020, "Influence of Lab Adapted Natural Diet and Microbiota on Life History and Metabolic Phenotype of Drosophila melanogaster", Microorganisms 8(12), 1972; https://doi.org/10.3390/microorganisms8121972
38. L. Griffin and L.K. Reed, 2020 “Effect of gut microbiota on α-amanitin tolerance in Drosophila tripunctata”, Ecology and Evolution, 10, 9419-9427 doi.org/10.1002/ece3.6630
37. C. Scott Chialvo, L. Griffin, L.K. Reed, L. Ciesla, 2020, “Exhaustive extraction of cyclopeptides from Amanita phalloides: guidelines for working with complex mixtures of secondary metabolites”, Ecology and Evolution, 10, 4233-4240 doi.org/10.1002/ece3.6191
36. D. Lopatto, R.G. Rosenwald…L.K. Reed, S.C.R. Elgin, 2020 "Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience". J Microbiol Biol Educ. 21(1):21.1.6. doi:10.1128/jmbe.v21i1.2005
2019
35. C.H. Scott Chialvo, B.E. White, L.K. Reed, K.A. Dyer, 2019 "A phylogenetic examination of host use evolution in the quinaria and testacea groups of Drosophila", Molecular Phylogenetics and Evolution, 130, 233-243 doi:10.1016/j.ympev.2018.10.027
2018
34. V. Oza, J. Aicher, and L.K. Reed, 2018 "Random forest analysis of untargeted metabolomics elucidates the role of diet and triglyceride storage in Drosophila melanogaster larvae", Metabolomics, 9(1), 5, doi.org/10.3390/metabo9010005
33. K. Lowman, B. Wyatt*, O. Cunneely*, L.K. Reed, 2018, "The TreadWheel: Interval Training Protocol for Gently Induced Exercise in Drosophila melanogaster", J. Vis. Exp. (136), e57788, doi:10.3791/57788
2017
32. R. Salek, P. Conesa, K. Cochrane, K. Haug, M. Williams, N. Kale, P. Moreno, K. Jayaseelan, J. Ramon Macias, V. Chandrasekhar, R.D. Hall, L.K Reed, M.R. Viant, C. O'Donovan, C. Steinbeck, 2017, "Automated Assembly of Species Metabolomes through Data Submission into a Public Repository" GigaScience 6(8):1-4. doi.org/10.1093/gigascience/gix062
31. W. Leung…L.K. Reed… SCR Elgin. 2017, "Retrotransposons are the major contributors to the expansion of the Drosophila ananassae Muller F element" (This paper from the Genomics Education Partnership has 272 co-authors; 237 of them participated as students.) G3: GENES, GENOMES, GENETICS 7(8):2439-2460. https://doi.org/10.1534/g3.117.040907
30. D. Lowry, S. Hoban, J. Kelley, K. Lotterhos, L.K. Reed, M. Antolin, A. Stofer, 2017, "Responsible RAD: Striving for best practices in population genomic studies of adaptation" Molecular Ecology Resources,17:366–369. doi.org/10.1111/1755-0998.12677
29. L.K. Reed, C.F. Baer, A.S. Edison, 2017, "Considerations when choosing a genetic model organism for metabolomics studies" Current Opinion in Chemical Biology 36:7–14
28. S.C.R. Elgin, C. Hauser, T.M. Holzen, C. Jones, A. Kleinschmit, J. Leatherman, Genomics Education Partnership (L.K. Reed co-author), 2017, "The GEP: Crowd-Sourcing Big Data Analysis with Undergraduates" Trends in Genetics, 33:81-85.
27. D.B. Lowry, S. Hoban, J.L. Kelley, K.E. Lotterhos, L.K. Reed, M.F. Antolin, A. Storfer, 2017, "Breaking RAD: The utility of restriction site associated DNA sequencing for genome scans of adaptation" Molecular Ecology Resources 17(2):142-152
2016
26. S. Mendez*, L. Watanabe, R. Hill*, M. Owens*, J. Moraczewski, G.C. Rowe, N. Riddle, and L.K. Reed, 2016, "The TreadWheel: A Novel Apparatus to Measure Genetic Variation in Response to Gently Induced Exercise for Drosophila." PLoS ONE 11(10): e0164706.
25. L.K. Reed, 2016 "Resources for Teaching Biological Evolution in the Deep South." In: C. Lynn, A. Glaze, L.K. Reed & W. Evans (eds.) Evolution Education in the American South: Culture, Politics, and Resources in and around Alabama. Palgrave Macmillan
24. C. Scott Chialvo, R. Che, D. Reif, A. Motsinger-Reif, and L.K. Reed, 2016 "Eigenvector metabolite analysis reveals dietary effects on the association among metabolite correlation patterns, gene expression, and phenotypes" Metabolomics 12(167)
23. A. Bombin and L.K. Reed, 2016 "The changing biodiversity of Alabama Drosophila: important impacts of seasonal variation, urbanization, and invasive species." Ecology and Evolution 12;6(19):7057-7069
22. K. Dew-Budd, J. Jarnigan, and L.K. Reed, 2016 "Genetic and sex-specific transgenerational effects of a high fat diet in Drosophila melanogaster" PLoS ONE 11(8): e0160857
21. S. Hoban, J. Kelley, K. Lotterhos, M. Antolin, G. Bradburd, , D. Lowry, M. Poss, L.K. Reed, A. Storfer, and M. Whitlock, 2016 "Finding the genomic basis of local adaptation in non-model organisms: pitfalls, practical solutions and future directions" Am. Nat. Vol. 188, pp. 379-397, DOI: 10.1086/688018
20. A.S. Edison, R.D. Hall, C.Junot, P.D. Karp, I.J. Kurland, R. Mistrik, L.K. Reed, K. Saito, R.M. Salek, C. Steinbeck, L.W. Sumner, M.R. Viant, 2016 "The time is right to focus on model organism metabolomes" Metabolites 6,8; doi:10.3390/metabo6010008
2015
19. S. Williams*, K. Dew-Budd*, K. Davis*, J. Anderson, R. Bishop*, K. Freeman*, D. Davis*, K. Bray*, L. Perkins*, J. Hubickey*, L.K. Reed 2015 "Metabolomic and gene expression profiles exhibit modular genetic and dietary structure linking metabolic syndrome phenotypes in Drosophila" G3: GENES, GENOMES, GENETICS 5:2817-2829
18. Leung, W, C.D. Shaffer, L.K. Reed, [940 student co-authors (four from UA)*, 74 faculty co-authors],
S.C.R. Elgin, 2015 "The Drosophila Muller F elements maintain a distinct set of genomic properties over 40 million years of evolution." G3: GENES, GENOMES, GENETICS 5:719-740
2014
17. D. Lopatto, et al. (L.K. Reed co-author), 2014 "A Central Support System Can Facilitate Implementation and Sustainability of a Classroom-Based Undergraduate Research Experience (CURE) in Genomics" CBE-Life Sciences 13:711-723
16. L.K. Reed, K. Lee, Z. Zang, L. Rashid, A. Poe*, B. Hsieh, N. Deighton, N. Glassbrook, R. Bodmer, G. Gibson, 2014 "Systems genomics of metabolic phenotypes in wild-type Drosophila melanogaster" Genetics, DOI: 10.1534/genetics.114.163857 - 2014 Spotlight Article
15. C. Shaffer, et al. (L.K.Reed co-author), 2014, "A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time." CBE- Life Sciences 13(1):111-130
2013
14. M. Polihronakis Richmond, S. Johnson, T.S. Haselkorn, M. Lam, L.K. Reed, T.A. Markow, 2013 "Genetic isolation of island populations: geographic barrier or a host switch?" Biological Journal of the Linnean Society, 108: 68-78
2010
13. L.K. Reed, S. Williams*, M. Springston*, J. Brown, K. Freeman*, C.E. DesRoches, M.B. Sokolowski, G. Gibson, 2010 “Genotype-by-Diet Interactions Drive Metabolic Phenotype Variation in Drosophila melanogaster” Genetics 185: 1009–1019
2009
12. E. Pfeiler, S. Castrezana, and L.K. Reed, 2009 “Genetic, ecological and morphological differences among populations of the cactophilic Drosophila mojavensis from southwestern USA and northwestern Mexico, with descriptions of two new subspecies” Journal of Natural History 43:15 923- 938.
2008
11. G.Gibson and L.K. Reed, 2008 “Cryptic genetic variation” Current Biology 18(21): R989-R990
10. L.K. Reed, B.A. LaFlamme*, T.A. Markow, 2008 “Genetic Architecture of Hybrid Male Sterility in Drosophila: Analysis of Intraspecies Variation for Interspecies Isolation.” PLoS ONE 3(8): e3076 doi:10.1371/journal.pone.0003076
9. S. W. Schaeffer et al (L.K. Reed coauthor), 2008 “Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps.” Genetics 179: 1601-1655.
2007
8. Drosophila 12 Genomes Consortium (L.K. Reed coauthor), 2007 “Evolution of genes and genomes in the Drosophila phylogeny” Nature 450: 203-218.
7. C.A. Machado, L.M. Matzkin, L.K. Reed, & T.A. Markow. 2007, “Multilocus nuclear sequences reveal intra and interspecific relationships among chromosomally polymorphic species of cactophilic Drosophila.” Molecular Ecology, 16:3009–3024.
6. L.K. Reed, M.E. Nyboer*, & T.A. Markow, 2007 “Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae.” Molecular Ecology, 16: 1007–1022.
2006
5. Markow, T.A., Reed, L.K. and Kelleher, E.S. 2006. “Sperm fate and function in reproductive isolation in Drosophila.” In: Roldan, E.S, and Gomiendo, M. Eds. Spermatology. Nottingham University Press, Nottingham.
4. D. Mathias, L.K. Reed, W.E. Bradshaw & C.M. Holzapfel, 2006 “Evolutionary divergence of circadian and photoperiodic phenotypes in the pitcher-plant mosquito, Wyeomyia smithii.” Journal of Biological Rhythms, 21:132-139.
2005
3. E. Pfeiler, L.K. Reed, & T.A. Markow, 2005 “Inhibition of alcohol dehydrogenase after 2-propanol exposure in different geographic races of Drosophila mojavensis: Lack of evidence for selection at the Adh-2 locus” Journal of Experimental Zoology, 304:159-168
2004
2. L.K. Reed & T.A. Markow, 2004 "Early Events in Speciation: Polymorphism for hybrid male sterility in Drosophila" PNAS, 101: 9009-9012
2003
1. J. Jaenike, K.A. Dyer, & L.K. Reed, 2003 “Within-population structure of competition and the dynamics of male killing Wolbachia” Evolutionary Ecology Research, 5 (7): 1023-1036
Books
1. Evolution Education in the American South: Culture, Politics, and Resources in and around Alabama, C.D. Lynn, A.Glaze, L.K. Reed & W. Evans (eds.) Palgrave Macmillan, 2016
